IMP

Process View

Mus musculus

17 genes annotated in mouse

embryonic digestive tract morphogenesis

The process in which the anatomical structures of the digestive tract are generated and organized during embryonic development. The digestive tract is the anatomical structure through which food passes and is processed.

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Known genes in the process in mouse Include functional analogs

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "embryonic digestive tract morphogenesis"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "embryonic digestive tract morphogenesis" (in gray)

Name	Description	Probability	Func Analog Organism
Shh	sonic hedgehog	0.998
Fgfr2	fibroblast growth factor receptor 2	0.991
Gli3	GLI-Kruppel family member GLI3	0.973
Fgf10	fibroblast growth factor 10	0.971
Sox2	SRY-box containing gene 2	0.967	Mouse
Pax3	paired box gene 3	0.933
Ctnnb1	catenin (cadherin associated protein), beta 1	0.923
Lef1	lymphoid enhancer binding factor 1	0.832	Mouse
Hes1	hairy and enhancer of split 1 (Drosophila)	0.804
Meox2	mesenchyme homeobox 2	0.791
Fgfr3	fibroblast growth factor receptor 3	0.785	Mouse
Bmp4	bone morphogenetic protein 4	0.706
Sox9	SRY-box containing gene 9	0.694	Mouse
Gli2	GLI-Kruppel family member GLI2	0.657	Zebrafish Mouse
Tbx3	T-box 3	0.656
Prrx1	paired related homeobox 1	0.647
Fgf8	fibroblast growth factor 8	0.611
Smad6	MAD homolog 6 (Drosophila)	0.588
Sall4	sal-like 4 (Drosophila)	0.477
Pitx2	paired-like homeodomain transcription factor 2	0.436
Eya1	eyes absent 1 homolog (Drosophila)	0.426
Fgf9	fibroblast growth factor 9	0.379	Mouse
Pitx1	paired-like homeodomain transcription factor 1	0.360	Mouse
Ror2	receptor tyrosine kinase-like orphan receptor 2	0.356
Tbx2	T-box 2	0.351
Nodal	nodal	0.341
Gata6	GATA binding protein 6	0.327	Mouse
Pten	phosphatase and tensin homolog	0.297
Zeb1	zinc finger E-box binding homeobox 1	0.291
Nog	noggin	0.284
Sox7	SRY-box containing gene 7	0.274	Mouse
Otx2	orthodenticle homolog 2 (Drosophila)	0.270
Hand1	heart and neural crest derivatives expressed transcript 1	0.262
Pax2	paired box gene 2	0.246
Twist2	twist homolog 2 (Drosophila)	0.241
Hoxd13	homeobox D13	0.241
Alx4	aristaless-like homeobox 4	0.226
Foxc1	forkhead box C1	0.218
Hhex	hematopoietically expressed homeobox	0.207
Ikzf1	IKAROS family zinc finger 1	0.204
Trp53	transformation related protein 53	0.187
Pax6	paired box gene 6	0.183
Insm1	insulinoma-associated 1	0.183
Hoxa13	homeobox A13	0.177
Fgf3	fibroblast growth factor 3	0.177	Mouse
Smad4	MAD homolog 4 (Drosophila)	0.175
Six1	sine oculis-related homeobox 1 homolog (Drosophila)	0.174	Mouse
Kdr	kinase insert domain protein receptor	0.172	Mouse
Ezh2	enhancer of zeste homolog 2 (Drosophila)	0.168
Gsc	goosecoid homeobox	0.165
Tcf21	transcription factor 21	0.164
She	src homology 2 domain-containing transforming protein E	0.160
Hic1	hypermethylated in cancer 1	0.150
Wnt5a	wingless-related MMTV integration site 5A	0.148
Foxc2	forkhead box C2	0.145
Nkx2-1	NK2 homeobox 1	0.142
Ascl1	achaete-scute complex homolog 1 (Drosophila)	0.141
Gata4	GATA binding protein 4	0.139
Nkx2-3	NK2 transcription factor related, locus 3 (Drosophila)	0.136
Efnb2	ephrin B2	0.133
Rarg	retinoic acid receptor, gamma	0.131
Nkx2-5	NK2 transcription factor related, locus 5 (Drosophila)	0.130
Fgfr1	fibroblast growth factor receptor 1	0.129	Mouse
Nf1	neurofibromatosis 1	0.128
Hdac2	histone deacetylase 2	0.109	Worm
Ptch1	patched homolog 1	0.107
Wnt3a	wingless-related MMTV integration site 3A	0.106
Chd7	chromodomain helicase DNA binding protein 7	0.105
Msx1	homeobox, msh-like 1	0.103
Edn3	endothelin 3	0.099
Pkdcc	protein kinase domain containing, cytoplasmic	0.098
Tgfb2	transforming growth factor, beta 2	0.097
Vegfa	vascular endothelial growth factor A	0.096
Epha1	Eph receptor A1	0.091
Tal1	T-cell acute lymphocytic leukemia 1	0.091
Tcf3	transcription factor 3	0.089
Gdnf	glial cell line derived neurotrophic factor	0.089
Six2	sine oculis-related homeobox 2 homolog (Drosophila)	0.088
Mycn	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	0.087
Pou3f3	POU domain, class 3, transcription factor 3	0.086
Hdac1	histone deacetylase 1	0.084	Worm
Cdc42	cell division cycle 42 homolog (S. cerevisiae)	0.082
Msx2	homeobox, msh-like 2	0.081
Hoxa2	homeobox A2	0.079
Sox11	SRY-box containing gene 11	0.077
Hand2	heart and neural crest derivatives expressed transcript 2	0.076
Vangl2	vang-like 2 (van gogh, Drosophila)	0.075
Hspg2	perlecan (heparan sulfate proteoglycan 2)	0.072
Trp63	transformation related protein 63	0.071
Pthlh	parathyroid hormone-like peptide	0.070
Gas1	growth arrest specific 1	0.069
Tcfap2a	transcription factor AP-2, alpha	0.069
Hoxa1	homeobox A1	0.069
Gbx2	gastrulation brain homeobox 2	0.068
Ren1	renin 1 structural	0.066
Rarb	retinoic acid receptor, beta	0.064
Hmx1	H6 homeobox 1	0.064
Robo3	roundabout homolog 3 (Drosophila)	0.063
Jun	Jun oncogene	0.063
Emx1	empty spiracles homolog 1 (Drosophila)	0.061
Sox4	SRY-box containing gene 4	0.061	Mouse
Smad1	MAD homolog 1 (Drosophila)	0.060
Rbl2	retinoblastoma-like 2	0.059	Worm
Flt4	FMS-like tyrosine kinase 4	0.059	Mouse
Pbx1	pre B-cell leukemia transcription factor 1	0.058
Tcfap2c	transcription factor AP-2, gamma	0.056
Lmx1b	LIM homeobox transcription factor 1 beta	0.056
Cdkn1b	cyclin-dependent kinase inhibitor 1B	0.054
Snai1	snail homolog 1 (Drosophila)	0.054
Arid1a	AT rich interactive domain 1A (SWI-like)	0.053
Psen1	presenilin 1	0.052
Hoxa5	homeobox A5	0.052
Neurog3	neurogenin 3	0.051
Foxg1	forkhead box G1	0.050
En1	engrailed 1	0.050
Dll1	delta-like 1 (Drosophila)	0.050
Bmpr1a	bone morphogenetic protein receptor, type 1A	0.050
Alx3	aristaless-like homeobox 3	0.049
Dhh	desert hedgehog	0.049	Mouse
Gja1	gap junction protein, alpha 1	0.048
Kitl	kit ligand	0.047
Hoxb4	homeobox B4	0.047
Tcf7	transcription factor 7, T-cell specific	0.046
Foxb1	forkhead box B1	0.046
Lmx1a	LIM homeobox transcription factor 1 alpha	0.045
Hoxa10	homeobox A10	0.045
Notch1	Notch gene homolog 1 (Drosophila)	0.044
Col1a1	collagen, type I, alpha 1	0.044
Tbx4	T-box 4	0.044
Jag1	jagged 1	0.043
Foxd2	forkhead box D2	0.043
Tie1	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	0.043
Slc9a3r2	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	0.041
Jarid2	jumonji, AT rich interactive domain 2	0.041
Tcf4	transcription factor 4	0.041
Epor	erythropoietin receptor	0.040
Nr5a1	nuclear receptor subfamily 5, group A, member 1	0.040
Acan	aggrecan	0.040
Mapk14	mitogen-activated protein kinase 14	0.039
Mta2	metastasis-associated gene family, member 2	0.039
Gli1	GLI-Kruppel family member GLI1	0.039	Mouse
Hes5	hairy and enhancer of split 5 (Drosophila)	0.038
Igdcc3	immunoglobulin superfamily, DCC subclass, member 3	0.038
Pcsk5	proprotein convertase subtilisin/kexin type 5	0.038
Hoxa11	homeobox A11	0.037
Tcf7l1	transcription factor 7-like 1 (T-cell specific, HMG box)	0.036	Mouse
Olig2	oligodendrocyte transcription factor 2	0.036
Gata3	GATA binding protein 3	0.036	Mouse
Fgf5	fibroblast growth factor 5	0.036	Mouse
Efna2	ephrin A2	0.036
Btbd17	BTB (POZ) domain containing 17	0.035
Dkk1	dickkopf homolog 1 (Xenopus laevis)	0.034
Axin2	axin2	0.034
Wnt6	wingless-related MMTV integration site 6	0.033
Isl1	ISL1 transcription factor, LIM/homeodomain	0.033
Ptch2	patched homolog 2	0.032
Fzd4	frizzled homolog 4 (Drosophila)	0.031
Rbl1	retinoblastoma-like 1 (p107)	0.031	Worm
Meis2	Meis homeobox 2	0.030
Ret	ret proto-oncogene	0.030
Irx3	Iroquois related homeobox 3 (Drosophila)	0.030
Hoxa4	homeobox A4	0.030
Ptk7	PTK7 protein tyrosine kinase 7	0.030
Tcf15	transcription factor 15	0.030
Efna4	ephrin A4	0.030
Atoh7	atonal homolog 7 (Drosophila)	0.029
Hoxd11	homeobox D11	0.029
Zfpm2	zinc finger protein, multitype 2	0.029
Myod1	myogenic differentiation 1	0.029
Sox10	SRY-box containing gene 10	0.028	Mouse
Pax7	paired box gene 7	0.028
Rspo2	R-spondin 2 homolog (Xenopus laevis)	0.028
Rb1	retinoblastoma 1	0.028	Worm
Epha4	Eph receptor A4	0.028
Apaf1	apoptotic peptidase activating factor 1	0.027
Tbx15	T-box 15	0.027
Cbl	Casitas B-lineage lymphoma	0.027
Smad3	MAD homolog 3 (Drosophila)	0.027
Hoxb6	homeobox B6	0.027
Csf1	colony stimulating factor 1 (macrophage)	0.026
Col2a1	collagen, type II, alpha 1	0.026
Efs	embryonal Fyn-associated substrate	0.026
Foxf2	forkhead box F2	0.026
Nos3	nitric oxide synthase 3, endothelial cell	0.026
Igf2bp1	insulin-like growth factor 2 mRNA binding protein 1	0.026
Twist1	twist homolog 1 (Drosophila)	0.025
Lhx3	LIM homeobox protein 3	0.024
Bmp7	bone morphogenetic protein 7	0.024
Lyl1	lymphoblastomic leukemia 1	0.024
Hoxb3	homeobox B3	0.024
Lrp6	low density lipoprotein receptor-related protein 6	0.024
Tgfbr3	transforming growth factor, beta receptor III	0.024
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	0.024
Zmym5	zinc finger, MYM-type 5	0.023
Yap1	yes-associated protein 1	0.023
Foxn1	forkhead box N1	0.023
Dlx1	distal-less homeobox 1	0.023
Emx2	empty spiracles homolog 2 (Drosophila)	0.023
Sox17	SRY-box containing gene 17	0.023	Mouse
Ltb	lymphotoxin B	0.023
Wnt1	wingless-related MMTV integration site 1	0.023
Hoxa3	homeobox A3	0.022
Prf1	perforin 1 (pore forming protein)	0.022
Vegfc	vascular endothelial growth factor C	0.022
Cxcl12	chemokine (C-X-C motif) ligand 12	0.022
Hey1	hairy/enhancer-of-split related with YRPW motif 1	0.022
Pitx3	paired-like homeodomain transcription factor 3	0.021	Mouse
Prrx2	paired related homeobox 2	0.021
Plac1	placental specific protein 1	0.021
Hoxa7	homeobox A7	0.021
Dmrt1	doublesex and mab-3 related transcription factor 1	0.021
Hoxd8	homeobox D8	0.021
Six3	sine oculis-related homeobox 3 homolog (Drosophila)	0.021	Mouse
Fgr	Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog	0.020
Rspo1	R-spondin homolog (Xenopus laevis)	0.020
Lhx5	LIM homeobox protein 5	0.020
Cacnb2	calcium channel, voltage-dependent, beta 2 subunit	0.020
Notch3	Notch gene homolog 3 (Drosophila)	0.020
Arid1b	AT rich interactive domain 1B (SWI-like)	0.020
Sox3	SRY-box containing gene 3	0.020	Mouse
Hcrt	hypocretin	0.019
Foxd3	forkhead box D3	0.019
Sim2	single-minded homolog 2 (Drosophila)	0.019
Npas1	neuronal PAS domain protein 1	0.019
Runx1t1	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	0.019
Ptprb	protein tyrosine phosphatase, receptor type, B	0.019
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.018
Sox18	SRY-box containing gene 18	0.018	Mouse
P2rx1	purinergic receptor P2X, ligand-gated ion channel, 1	0.018
Smad7	MAD homolog 7 (Drosophila)	0.018
Zfp503	zinc finger protein 503	0.018
Nfkb2	nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	0.018
Pak1	p21 protein (Cdc42/Rac)-activated kinase 1	0.018
Pou3f4	POU domain, class 3, transcription factor 4	0.018
Lrp2	low density lipoprotein receptor-related protein 2	0.018
Agrp	agouti related protein	0.018
Atf2	activating transcription factor 2	0.018
Wnt11	wingless-related MMTV integration site 11	0.017
Hmx2	H6 homeobox 2	0.017
Hoxa9	homeobox A9	0.017
Tyrobp	TYRO protein tyrosine kinase binding protein	0.017
Hesx1	homeobox gene expressed in ES cells	0.017
Tgfa	transforming growth factor alpha	0.017
Mmp14	matrix metallopeptidase 14 (membrane-inserted)	0.017
BC021891	cDNA sequence BC021891	0.017
Ets1	E26 avian leukemia oncogene 1, 5' domain	0.017
Tgfb1	transforming growth factor, beta 1	0.017
Smo	smoothened homolog (Drosophila)	0.017	Zebrafish
Eng	endoglin	0.017
Sin3a	transcriptional regulator, SIN3A (yeast)	0.017
Ace	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	0.017
Fam164c	family with sequence similarity 164, member C	0.017
Pax8	paired box gene 8	0.016
Hoxc4	homeobox C4	0.016
Map3k14	mitogen-activated protein kinase kinase kinase 14	0.016
Barx1	BarH-like homeobox 1	0.016	Mouse
Foxf1a	forkhead box F1a	0.016	Human
Angpt4	angiopoietin 4	0.016
Npr3	natriuretic peptide receptor 3	0.016
Kcnq1	potassium voltage-gated channel, subfamily Q, member 1	0.016
Bmp2	bone morphogenetic protein 2	0.016
Ephb2	Eph receptor B2	0.016
Fzd2	frizzled homolog 2 (Drosophila)	0.016
Aplnr	apelin receptor	0.015
Htr1f	5-hydroxytryptamine (serotonin) receptor 1F	0.015
Suz12	suppressor of zeste 12 homolog (Drosophila)	0.015
Six5	sine oculis-related homeobox 5 homolog (Drosophila)	0.015	Mouse
Hoxd4	homeobox D4	0.015
Tpo	thyroid peroxidase	0.015
Sema5b	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	0.015
H3f3a	H3 histone, family 3A	0.015
Rhbdl3	rhomboid, veinlet-like 3 (Drosophila)	0.015
Wnt4	wingless-related MMTV integration site 4	0.015
Acvrl1	activin A receptor, type II-like 1	0.015
Art5	ADP-ribosyltransferase 5	0.015
Snai2	snail homolog 2 (Drosophila)	0.015
Capn6	calpain 6	0.015
Kcnk2	potassium channel, subfamily K, member 2	0.015
Bmp5	bone morphogenetic protein 5	0.015
Bnc1	basonuclin 1	0.015
Fgf18	fibroblast growth factor 18	0.015
Crebbp	CREB binding protein	0.015
Fzd8	frizzled homolog 8 (Drosophila)	0.014
Evx1	even skipped homeotic gene 1 homolog	0.014
Dll4	delta-like 4 (Drosophila)	0.014
Dlx5	distal-less homeobox 5	0.014
Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3	0.014
Wnt3	wingless-related MMTV integration site 3	0.014
Mta1	metastasis associated 1	0.014
Pou2f2	POU domain, class 2, transcription factor 2	0.014
Efnb1	ephrin B1	0.014
Padi3	peptidyl arginine deiminase, type III	0.014
Gh	growth hormone	0.014
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	0.014
Mesp1	mesoderm posterior 1	0.014
Adra2b	adrenergic receptor, alpha 2b	0.014
Phlda2	pleckstrin homology-like domain, family A, member 2	0.014
Bcl6b	B-cell CLL/lymphoma 6, member B	0.014
Hoxb1	homeobox B1	0.014
Cfc1	cripto, FRL-1, cryptic family 1	0.014
Hoxd9	homeobox D9	0.014
a	nonagouti	0.013
Tbx1	T-box 1	0.013
Cdon	cell adhesion molecule-related/down-regulated by oncogenes	0.013
Mecom	MDS1 and EVI1 complex locus	0.013
Ptger1	prostaglandin E receptor 1 (subtype EP1)	0.013
Sall3	sal-like 3 (Drosophila)	0.013
Myb	myeloblastosis oncogene	0.013
Adra2a	adrenergic receptor, alpha 2a	0.013
Lrp4	low density lipoprotein receptor-related protein 4	0.013
H2-Oa	histocompatibility 2, O region alpha locus	0.013
Smad2	MAD homolog 2 (Drosophila)	0.013
Bdkrb2	bradykinin receptor, beta 2	0.013
Jag2	jagged 2	0.013
Hoxd3	homeobox D3	0.013
Tead2	TEA domain family member 2	0.013
Gpc3	glypican 3	0.013
Hoxb13	homeobox B13	0.013
Erbb2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	0.013
Tlx1	T-cell leukemia, homeobox 1	0.013
Mgat3	mannoside acetylglucosaminyltransferase 3	0.013
Tead4	TEA domain family member 4	0.013
Sfrp2	secreted frizzled-related protein 2	0.013
Notch2	Notch gene homolog 2 (Drosophila)	0.013
Guca2b	guanylate cyclase activator 2b (retina)	0.013
Myl7	myosin, light polypeptide 7, regulatory	0.013
Tfdp2	transcription factor Dp 2	0.013
Tnfsf11	tumor necrosis factor (ligand) superfamily, member 11	0.013
Six4	sine oculis-related homeobox 4 homolog (Drosophila)	0.012	Mouse
Ppp1cc	protein phosphatase 1, catalytic subunit, gamma isoform	0.012
Foxa2	forkhead box A2	0.012
Zbtb46	zinc finger and BTB domain containing 46	0.012
Hoxd1	homeobox D1	0.012
Cdkn1c	cyclin-dependent kinase inhibitor 1C (P57)	0.012
Runx1	runt related transcription factor 1	0.012
Hnf4a	hepatic nuclear factor 4, alpha	0.012
Ebf3	early B-cell factor 3	0.012
Dusp9	dual specificity phosphatase 9	0.012
Srcin1	SRC kinase signaling inhibitor 1	0.012
Eya4	eyes absent 4 homolog (Drosophila)	0.012
Sox13	SRY-box containing gene 13	0.012
Hes2	hairy and enhancer of split 2 (Drosophila)	0.011
Fxyd2	FXYD domain-containing ion transport regulator 2	0.011
Rhox6	reproductive homeobox 6	0.011
Rasgrp1	RAS guanyl releasing protein 1	0.011
Tgif2	TGFB-induced factor homeobox 2	0.011
Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	0.011
Pou5f1	POU domain, class 5, transcription factor 1	0.011
Kcnj5	potassium inwardly-rectifying channel, subfamily J, member 5	0.011
Nrk	Nik related kinase	0.011
Cux2	cut-like homeobox 2	0.011
Gfi1b	growth factor independent 1B	0.011
Cdh5	cadherin 5	0.011
S1pr4	sphingosine-1-phosphate receptor 4	0.011
Plcg1	phospholipase C, gamma 1	0.011
Sult5a1	sulfotransferase family 5A, member 1	0.011
Bptf	bromodomain PHD finger transcription factor	0.011
Ribc2	RIB43A domain with coiled-coils 2	0.011
Itgb1	integrin beta 1 (fibronectin receptor beta)	0.011
Myog	myogenin	0.011
Acvr2b	activin receptor IIB	0.011
Kcnj12	potassium inwardly-rectifying channel, subfamily J, member 12	0.011
Th	tyrosine hydroxylase	0.011
Sgpl1	sphingosine phosphate lyase 1	0.010
Hoxb5	homeobox B5	0.010
Fst	follistatin	0.010
Socs1	suppressor of cytokine signaling 1	0.010
Colq	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	0.010
Inpp5j	inositol polyphosphate 5-phosphatase J	0.010
Zfp362	zinc finger protein 362	0.010
Chuk	conserved helix-loop-helix ubiquitous kinase	0.010
Fli1	Friend leukemia integration 1	0.010
Nkx2-4	NK2 transcription factor related, locus 4 (Drosophila)	0.010
Hist1h1t	histone cluster 1, H1t	0.010
Hmga2	high mobility group AT-hook 2	0.010
Fev	FEV (ETS oncogene family)	0.010
Fgfbp1	fibroblast growth factor binding protein 1	0.010
Pou3f1	POU domain, class 3, transcription factor 1	0.010