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Mus musculus

0 genes annotated in mouse

regulation of transcription by chromatin organization

Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.

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Gene Predictions

Click on a gene's description to view its network relationships with genes known to be involved in "regulation of transcription by chromatin organization"

Show only novel predictions Show only unknown genes Highlight genes with functional analogs involved in "regulation of transcription by chromatin organization" (in gray)

Name	Description	Probability	Func Analog Organism
Smc1a	structural maintenance of chromosomes 1A	0.984
Trim28	tripartite motif-containing 28	0.798
Mcm2	minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	0.754
Kdm2b	lysine (K)-specific demethylase 2B	0.694
Trim24	tripartite motif-containing 24	0.631
Srsf1	serine/arginine-rich splicing factor 1	0.566
Timeless	timeless homolog (Drosophila)	0.552
Mcm3	minichromosome maintenance deficient 3 (S. cerevisiae)	0.383
Rnf2	ring finger protein 2	0.355
Mcm4	minichromosome maintenance deficient 4 homolog (S. cerevisiae)	0.297
Sfpq	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	0.289
Mcm7	minichromosome maintenance deficient 7 (S. cerevisiae)	0.283
Cdt1	chromatin licensing and DNA replication factor 1	0.253
Pold1	polymerase (DNA directed), delta 1, catalytic subunit	0.235
Stag1	stromal antigen 1	0.232
Rcc2	regulator of chromosome condensation 2	0.218
Dnmt1	DNA methyltransferase (cytosine-5) 1	0.215
Lig1	ligase I, DNA, ATP-dependent	0.213
Smc3	structural maintenace of chromosomes 3	0.170
Casp8ap2	caspase 8 associated protein 2	0.152
Mcm6	minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	0.150
Suz12	suppressor of zeste 12 homolog (Drosophila)	0.134
Dkc1	dyskeratosis congenita 1, dyskerin homolog (human)	0.132
Cbx5	chromobox homolog 5 (Drosophila HP1a)	0.120
Baz1a	bromodomain adjacent to zinc finger domain 1A	0.108
Mecp2	methyl CpG binding protein 2	0.092
Ep400	E1A binding protein p400	0.092
Pou5f1	POU domain, class 5, transcription factor 1	0.091
Rif1	Rap1 interacting factor 1 homolog (yeast)	0.091
Nucks1	nuclear casein kinase and cyclin-dependent kinase substrate 1	0.091
Thoc2	THO complex 2	0.090
Smarca4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	0.087
Cbx1	chromobox homolog 1 (Drosophila HP1 beta)	0.087
Ctcf	CCCTC-binding factor	0.086
Rnpc3	RNA-binding region (RNP1, RRM) containing 3	0.086
Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	0.082
Wdr5	WD repeat domain 5	0.082
Atxn7	ataxin 7	0.078
Ddx10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	0.077
Baz1b	bromodomain adjacent to zinc finger domain, 1B	0.076
E2f1	E2F transcription factor 1	0.075
Bcor	BCL6 interacting corepressor	0.073
Msl2	male-specific lethal 2 homolog (Drosophila)	0.073
Pcm1	pericentriolar material 1	0.068
Pole	polymerase (DNA directed), epsilon	0.063
Bclaf1	BCL2-associated transcription factor 1	0.062
Arid1b	AT rich interactive domain 1B (SWI-like)	0.062
Hnrnpab	heterogeneous nuclear ribonucleoprotein A/B	0.061
Hnrnph1	heterogeneous nuclear ribonucleoprotein H1	0.060
Prim1	DNA primase, p49 subunit	0.059
Kdm1a	lysine (K)-specific demethylase 1A	0.056
Rfc5	replication factor C (activator 1) 5	0.055
Sae1	SUMO1 activating enzyme subunit 1	0.054
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	0.051
Ubap2	ubiquitin-associated protein 2	0.051
Epc2	enhancer of polycomb homolog 2 (Drosophila)	0.051
Trrap	transformation/transcription domain-associated protein	0.050
Rsbn1	rosbin, round spermatid basic protein 1	0.050
Smc6	structural maintenance of chromosomes 6	0.050
Csrp2bp	cysteine and glycine-rich protein 2 binding protein	0.047
Ythdc1	YTH domain containing 1	0.047
Rb1	retinoblastoma 1	0.045
Klhl24	kelch-like 24 (Drosophila)	0.045
Mael	maelstrom homolog (Drosophila)	0.045
Cbx3	chromobox homolog 3 (Drosophila HP1 gamma)	0.045
Rrm1	ribonucleotide reductase M1	0.043
Cdca5	cell division cycle associated 5	0.043
Csnk2a1	casein kinase 2, alpha 1 polypeptide	0.042
Rbm26	RNA binding motif protein 26	0.042
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	0.041
Nup153	nucleoporin 153	0.041
Chaf1a	chromatin assembly factor 1, subunit A (p150)	0.040
Hmgb1	high mobility group box 1	0.040
Creb1	cAMP responsive element binding protein 1	0.040
Rad21	RAD21 homolog (S. pombe)	0.040
Usp7	ubiquitin specific peptidase 7	0.039
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	0.039
Rrm2	ribonucleotide reductase M2	0.039
Ddx46	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	0.039
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	0.039
Nanog	Nanog homeobox	0.038
Mga	MAX gene associated	0.038
Hcfc1	host cell factor C1	0.038
Brca2	breast cancer 2	0.037
Cad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	0.036
Dmap1	DNA methyltransferase 1-associated protein 1	0.036
Cdkn1b	cyclin-dependent kinase inhibitor 1B	0.035
Mms22l	MMS22-like, DNA repair protein	0.034
L3mbtl2	l(3)mbt-like 2 (Drosophila)	0.034
Anapc5	anaphase-promoting complex subunit 5	0.034
Sp1	trans-acting transcription factor 1	0.033
Max	Max protein	0.033
Dhx15	DEAH (Asp-Glu-Ala-His) box polypeptide 15	0.033
Pparg	peroxisome proliferator activated receptor gamma	0.032
Cdc6	cell division cycle 6 homolog (S. cerevisiae)	0.032
Bod1l	biorientation of chromosomes in cell division 1-like	0.030
Ing3	inhibitor of growth family, member 3	0.029
Hells	helicase, lymphoid specific	0.028
Cnot4	CCR4-NOT transcription complex, subunit 4	0.028
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	0.028
Eftud2	elongation factor Tu GTP binding domain containing 2	0.027
Ncaph	non-SMC condensin I complex, subunit H	0.027
Ythdf1	YTH domain family 1	0.027
Arid4b	AT rich interactive domain 4B (RBP1-like)	0.027
Rbm5	RNA binding motif protein 5	0.026
Clspn	claspin homolog (Xenopus laevis)	0.025
Hmgn5	high-mobility group nucleosome binding domain 5	0.025
Tada2a	transcriptional adaptor 2A	0.025
Srsf4	serine/arginine-rich splicing factor 4	0.025
Ncapg2	non-SMC condensin II complex, subunit G2	0.025
Pds5b	PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	0.024
Rbm25	RNA binding motif protein 25	0.024
Hist1h3g	histone cluster 1, H3g	0.024
2810474O19Rik	RIKEN cDNA 2810474O19 gene	0.024
Zfp292	zinc finger protein 292	0.024
Ctbp2	C-terminal binding protein 2	0.024
Tubgcp2	tubulin, gamma complex associated protein 2	0.023
Matr3	matrin 3	0.023
Brd4	bromodomain containing 4	0.023
Ccar1	cell division cycle and apoptosis regulator 1	0.023
Rad51	RAD51 homolog (S. cerevisiae)	0.023
Smek2	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	0.023
Rpa1	replication protein A1	0.022
Tada3	transcriptional adaptor 3	0.022
Chtf18	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	0.022
Trp53	transformation related protein 53	0.022
Crebbp	CREB binding protein	0.022
Cpsf2	cleavage and polyadenylation specific factor 2	0.022
Arntl	aryl hydrocarbon receptor nuclear translocator-like	0.022
Wdhd1	WD repeat and HMG-box DNA binding protein 1	0.022
Tcof1	Treacher Collins Franceschetti syndrome 1, homolog	0.022
Dek	DEK oncogene (DNA binding)	0.021
Mll3	myeloid/lymphoid or mixed-lineage leukemia 3	0.021
Ccnl1	cyclin L1	0.021
Xrn1	5'-3' exoribonuclease 1	0.021
Stmn1	stathmin 1	0.021
Yeats2	YEATS domain containing 2	0.021
Lepr	leptin receptor	0.021
Skp2	S-phase kinase-associated protein 2 (p45)	0.021
Smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	0.021	Yeast
Uhrf1	ubiquitin-like, containing PHD and RING finger domains, 1	0.020
A230046K03Rik	RIKEN cDNA A230046K03 gene	0.020
Akap9	A kinase (PRKA) anchor protein (yotiao) 9	0.020
Rnps1	ribonucleic acid binding protein S1	0.020
Rcc1	regulator of chromosome condensation 1	0.019
Pum1	pumilio 1 (Drosophila)	0.019
Pola1	polymerase (DNA directed), alpha 1	0.019
Cand1	cullin associated and neddylation disassociated 1	0.019
Rock1	Rho-associated coiled-coil containing protein kinase 1	0.019
Chd2	chromodomain helicase DNA binding protein 2	0.019
Ezh2	enhancer of zeste homolog 2 (Drosophila)	0.019
Ptges3	prostaglandin E synthase 3 (cytosolic)	0.019
Psip1	PC4 and SFRS1 interacting protein 1	0.019
Birc6	baculoviral IAP repeat-containing 6	0.019
Rlf	rearranged L-myc fusion sequence	0.019
Tnrc6b	trinucleotide repeat containing 6b	0.019
Dhx9	DEAH (Asp-Glu-Ala-His) box polypeptide 9	0.019
Acin1	apoptotic chromatin condensation inducer 1	0.018
Tcerg1	transcription elongation regulator 1 (CA150)	0.018
Braf	Braf transforming gene	0.018
Phip	pleckstrin homology domain interacting protein	0.018
Amhr2	anti-Mullerian hormone type 2 receptor	0.018
Parp1	poly (ADP-ribose) polymerase family, member 1	0.018
Naf1	nuclear assembly factor 1 homolog (S. cerevisiae)	0.018
Plekha5	pleckstrin homology domain containing, family A member 5	0.018
Ylpm1	YLP motif containing 1	0.018
Scaf11	SR-related CTD-associated factor 11	0.018
Srrt	serrate RNA effector molecule homolog (Arabidopsis)	0.018
Tk1	thymidine kinase 1	0.018
Med1	mediator complex subunit 1	0.018
Ilf3	interleukin enhancer binding factor 3	0.018
Slc4a7	solute carrier family 4, sodium bicarbonate cotransporter, member 7	0.018
Anp32e	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	0.018
Fen1	flap structure specific endonuclease 1	0.018
Fmr1	fragile X mental retardation syndrome 1 homolog	0.018
Top1	topoisomerase (DNA) I	0.018
Ctbp1	C-terminal binding protein 1	0.018	Human
Larp7	La ribonucleoprotein domain family, member 7	0.017
Ep300	E1A binding protein p300	0.017
Npc1	Niemann Pick type C1	0.017
Rfwd3	ring finger and WD repeat domain 3	0.017
Mier3	mesoderm induction early response 1, family member 3	0.017
Pask	PAS domain containing serine/threonine kinase	0.017
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	0.017
Zfp800	zinc finger protein 800	0.017
Pom121	nuclear pore membrane protein 121	0.017
Nudt3	nudix (nucleotide diphosphate linked moiety X)-type motif 3	0.017
Sf3b2	splicing factor 3b, subunit 2	0.017
Srrm1	serine/arginine repetitive matrix 1	0.017
Tcam1	testicular cell adhesion molecule 1	0.016
Bbx	bobby sox homolog (Drosophila)	0.016
Cry1	cryptochrome 1 (photolyase-like)	0.016
Nono	non-POU-domain-containing, octamer binding protein	0.016
Lbr	lamin B receptor	0.016
Zfp26	zinc finger protein 26	0.016
Zfml	zinc finger, matrin-like	0.016
Med16	mediator complex subunit 16	0.016
Prpf8	pre-mRNA processing factor 8	0.016
Apc	adenomatosis polyposis coli	0.016
Peli1	pellino 1	0.016
Rybp	RING1 and YY1 binding protein	0.016
Tmpo	thymopoietin	0.016
Rbm14	RNA binding motif protein 14	0.016
Supt16h	suppressor of Ty 16 homolog (S. cerevisiae)	0.015
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	0.015
Zfp281	zinc finger protein 281	0.015
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	0.015
Piwil1	piwi-like homolog 1 (Drosophila)	0.015
Sbno1	sno, strawberry notch homolog 1 (Drosophila)	0.015
Donson	downstream neighbor of SON	0.015
Lcor	ligand dependent nuclear receptor corepressor	0.015
Zfp445	zinc finger protein 445	0.015
Hnrnpm	heterogeneous nuclear ribonucleoprotein M	0.015
Rbm15	RNA binding motif protein 15	0.015
Cdca7l	cell division cycle associated 7 like	0.015
Sin3a	transcriptional regulator, SIN3A (yeast)	0.015
Senp1	SUMO1/sentrin specific peptidase 1	0.015
Smc5	structural maintenance of chromosomes 5	0.015
Ddx19a	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	0.015
Hdgf	hepatoma-derived growth factor	0.015
Luc7l2	LUC7-like 2 (S. cerevisiae)	0.015
Suv39h1	suppressor of variegation 3-9 homolog 1 (Drosophila)	0.015
Ercc6l	excision repair cross-complementing rodent repair deficiency complementation group 6 - like	0.014
Tubb5	tubulin, beta 5	0.014
Tpr	translocated promoter region	0.014
Zbtb11	zinc finger and BTB domain containing 11	0.014
Zfp146	zinc finger protein 146	0.014
Tonsl	tonsoku-like, DNA repair protein	0.014
Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	0.014
Prim2	DNA primase, p58 subunit	0.014
Cdca7	cell division cycle associated 7	0.014
Ndn	necdin	0.014
Tuba1b	tubulin, alpha 1B	0.014
Ilf2	interleukin enhancer binding factor 2	0.014
Smc2	structural maintenance of chromosomes 2	0.014
Atxn7l3	ataxin 7-like 3	0.014
Luc7l3	LUC7-like 3 (S. cerevisiae)	0.014
Ash1l	ash1 (absent, small, or homeotic)-like (Drosophila)	0.014
Dck	deoxycytidine kinase	0.014
Eri1	exoribonuclease 1	0.014
Ssrp1	structure specific recognition protein 1	0.014
Siah1b	seven in absentia 1B	0.014
Topors	topoisomerase I binding, arginine/serine-rich	0.014
Otud4	OTU domain containing 4	0.014
Pcf11	cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	0.013
4933421E11Rik	RIKEN cDNA 4933421E11 gene	0.013
Sf3b1	splicing factor 3b, subunit 1	0.013
Ints5	integrator complex subunit 5	0.013
1110028C15Rik	RIKEN cDNA 1110028C15 gene	0.013
Cnot7	CCR4-NOT transcription complex, subunit 7	0.013
Zeb1	zinc finger E-box binding homeobox 1	0.013
Lrr1	leucine rich repeat protein 1	0.013
Rrp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	0.013
Sf3b3	splicing factor 3b, subunit 3	0.013
Rapgef6	Rap guanine nucleotide exchange factor (GEF) 6	0.013
Taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	0.013
Mib1	mindbomb homolog 1 (Drosophila)	0.013
Kdm6a	4lysine (K)-specific demethylase 6A	0.013
Cstf2	cleavage stimulation factor, 3' pre-RNA subunit 2	0.013
Rsf1	remodeling and spacing factor 1	0.013
Mki67	antigen identified by monoclonal antibody Ki 67	0.013
Rfc2	replication factor C (activator 1) 2	0.013
Snrpa	small nuclear ribonucleoprotein polypeptide A	0.013
Lmnb1	lamin B1	0.013
Huwe1	HECT, UBA and WWE domain containing 1	0.012
Setdb1	SET domain, bifurcated 1	0.012
Scaf4	SR-related CTD-associated factor 4	0.012
Dnmt3l	DNA (cytosine-5-)-methyltransferase 3-like	0.012
Bicd1	bicaudal D homolog 1 (Drosophila)	0.012
Haus6	HAUS augmin-like complex, subunit 6	0.012
Chek1	checkpoint kinase 1 homolog (S. pombe)	0.012
Dcaf7	DDB1 and CUL4 associated factor 7	0.012
N4bp1	NEDD4 binding protein 1	0.012
Arid1a	AT rich interactive domain 1A (SWI-like)	0.012
Nup155	nucleoporin 155	0.012
Spesp1	sperm equatorial segment protein 1	0.012
Aff4	AF4/FMR2 family, member 4	0.012
Ap1g1	adaptor protein complex AP-1, gamma 1 subunit	0.012
Qser1	glutamine and serine rich 1	0.012
Cdk2ap1	CDK2 (cyclin-dependent kinase 2)-associated protein 1	0.012
Ncapd2	non-SMC condensin I complex, subunit D2	0.012
Zfp280d	zinc finger protein 280D	0.012
Mtf2	metal response element binding transcription factor 2	0.012
BC005561	cDNA sequence BC005561	0.012
Cbll1	Casitas B-lineage lymphoma-like 1	0.012
Caprin1	cell cycle associated protein 1	0.012
Ints1	integrator complex subunit 1	0.011
Rnf187	ring finger protein 187	0.011
Usp34	ubiquitin specific peptidase 34	0.011
Zbtb33	zinc finger and BTB domain containing 33	0.011
Gatad2b	GATA zinc finger domain containing 2B	0.011
Cbl	Casitas B-lineage lymphoma	0.011
Tnf	tumor necrosis factor	0.011
Rad51ap1	RAD51 associated protein 1	0.011
AU016916	expressed sequence AU016916	0.011
Cnot6	CCR4-NOT transcription complex, subunit 6	0.011
Parg	poly (ADP-ribose) glycohydrolase	0.011
BC016423	cDNA sequence BC016423	0.011
Irs2	insulin receptor substrate 2	0.011
Mark2	MAP/microtubule affinity-regulating kinase 2	0.011
Bub1b	budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)	0.011
Piwil2	piwi-like homolog 2 (Drosophila)	0.011
Chd4	chromodomain helicase DNA binding protein 4	0.011
Ranbp2	RAN binding protein 2	0.011
Wac	WW domain containing adaptor with coiled-coil	0.011
Kif22	kinesin family member 22	0.011
Mbd4	methyl-CpG binding domain protein 4	0.011
Pcbp2	poly(rC) binding protein 2	0.011
Ino80d	INO80 complex subunit D	0.011
Zfp317	zinc finger protein 317	0.011
Cherp	calcium homeostasis endoplasmic reticulum protein	0.011
Csnk2a2	casein kinase 2, alpha prime polypeptide	0.011
Kdm5b	lysine (K)-specific demethylase 5B	0.011
Rictor	RPTOR independent companion of MTOR, complex 2	0.011
Smc1b	structural maintenance of chromosomes 1B	0.011
Asf1b	ASF1 anti-silencing function 1 homolog B (S. cerevisiae)	0.010
Morf4l1	mortality factor 4 like 1	0.010
Atm	ataxia telangiectasia mutated homolog (human)	0.010
Cpsf6	cleavage and polyadenylation specific factor 6	0.010
Cenpt	centromere protein T	0.010
Mat2a	methionine adenosyltransferase II, alpha	0.010
Sp4	trans-acting transcription factor 4	0.010
Pola2	polymerase (DNA directed), alpha 2	0.010
Aqr	aquarius	0.010
Sf3a1	splicing factor 3a, subunit 1	0.010
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	0.010
Pogz	pogo transposable element with ZNF domain	0.010
Usp10	ubiquitin specific peptidase 10	0.010
Nipbl	Nipped-B homolog (Drosophila)	0.010
Ahctf1	AT hook containing transcription factor 1	0.010
Nfya	nuclear transcription factor-Y alpha	0.010
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	0.010
Dbr1	debranching enzyme homolog 1 (S. cerevisiae)	0.010
Armcx2	armadillo repeat containing, X-linked 2	0.010
Epc1	enhancer of polycomb homolog 1 (Drosophila)	0.010